Analyze molecular dynamics simulations with automation, reproducibility and scientific clarity

DynamiSpectra is a Python-powered web tool for post-processing of GROMACS simulation outputs.
It performs statistical calculations such as mean and standard deviation, and generates
publication-ready plots from your dynamics data in just a few clicks.

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Easy to Use

Simply upload your simulation output files to DynamiSpectra. No complex setup or preprocessing required — get your data visualized quickly.

Support for Replicas

Plot multiple simulation replicates and compute the mean and standard deviation automatically. Easily compare different conditions or time windows.

Interactive Plots

All plots generated by DynamiSpectra are interactive. Customize, explore, and export the images for publications easily.

Expand the Power of Molecular Dynamics

DynamiSpectra empowers researchers and students by simplifying analysis, saving time, and promoting scientific insights.

  • Accelerate Your Research

    Quickly generate key visualizations and statistical summaries to fast-track your structural biology discoveries.

  • Educational Resource

    Ideal for training students and new researchers in molecular dynamics without requiring prior coding experience.

  • No Programming Required

    Designed for ease of use by scientists from all backgrounds — just upload your output and explore the results.

  • Faster Initial Insights

    Gain immediate understanding of your simulations before diving into complex post-processing pipelines.

  • Interactive Visualizations

    All plots are interactive to fit your presentation or paper needs.

  • Versatile and Expandable

    Supports multiple analyses with a growing library of features — built to evolve with your work.

Accessible via Web or Python — your workflow, your way

Use DynamiSpectra online or integrate it into your local Python workflows with ease.